Install Rosetta-3.1 and CS-Rosetta on Mac OS 10.6
A note of my installation in the last 3 days.
![Mac os x 10 13 6 download Mac os x 10 13 6 download](/uploads/1/2/6/7/126729327/479574928.png)
- Rosetta 3.4 on Mac OS X v 10.6.8 #1. I just downloaded Rosetta 3.4 from the RosettaCommons website and am trying to compile it. However, it keeps failing with the following message (while Rosetta 3.3 compiles fine). License and Download; Ways to Use; Documentation; Release Notes; Related Projects; Servers; Documentation & Support.
- Presenting Apple Music on Mac. The new Apple Music app is the ultimate music streaming experience on Mac. 1 Explore a library of 60 million songs, discover new artists and tracks, find the perfect playlist, download and listen offline, or enjoy all the music you’ve collected over the years. And find it all in your music library on all your devices.
- Apparently there is a linux libz available (perhaps it ships with the code) 'lib/linux-x86-32/libz.a', and a mac libz 'lib/macos-ppc-32/libz.a', which is also wrong. I don't know what one is right, but it seems likely what you need is a new version of libz.
- On a Mac, you’d expect nothing less. The Universal truth. Most of the applications that come on your Intel-based Mac are Universal applications, designed for screaming performance with the Intel Core Duo. That includes Mac OS X, iLife, Safari and Mail. Most existing applications will continue to run, thanks to Rosetta.
Os x 10.6 free download - Apple Java for OS X 10.6, R for Mac OS X, Apple Mac OS X Mavericks, and many more programs.
Machine: iMac 3.06 GHz, core i3, 4 GB Ram , OS 10.6.4
Part A –Rosetta 3.1
First download Rosetta 3.1, all the bundle stuff.
–uncompress the bundle file, and keep uncompressing all “.tgz” files
Then download corrections for rosetta_source at here: http://zinc.ucsf.edu/~colin/snow_leopard_tools.tar.gz
(see this discussion topic at Rosetta forum : node 1705)
–go to rosetta_source, uncompress the snow_leopard_tool.tar.gz and the uncompressed files will automatically overwrite the files.
–uncompress the bundle file, and keep uncompressing all “.tgz” files
Then download corrections for rosetta_source at here: http://zinc.ucsf.edu/~colin/snow_leopard_tools.tar.gz
(see this discussion topic at Rosetta forum : node 1705)
–go to rosetta_source, uncompress the snow_leopard_tool.tar.gz and the uncompressed files will automatically overwrite the files.
https://trustedsite501.weebly.com/precision-tune-auto-care-redwood-city.html. — use “scons” to compile and install by command: “scons bin mode=release” Can you download google docs on mac.
The compilation takes approximately 1 hour.
Mac Os X 10.6.8 Dmg
NOTE: For Mac users, you can install scons by using Fink.
Second, you need g77 to compile the rosetta_fragments, but even using the unstable packages provided in fink, the x86_64 version of g77 for OS 10.6 is not available. I went to “high performance computing for mac os X” to download g77-3.4 which is a binary file already. No need to compile it by yourself.
https://reachrenew850.weebly.com/blog/sniper-elite-3-for-mac-free-download. (I tried gfortran, a lot of errors occurred, but g77 does good job).
https://reachrenew850.weebly.com/blog/sniper-elite-3-for-mac-free-download. (I tried gfortran, a lot of errors occurred, but g77 does good job).
After getting g77 works, go to resetta_fragments/nnmake and type make to have pNNMAKE.gnu compiled. This is required for CS-Rosetta,too.
Part B–CS-Rosetta
First, download the all required compressed file at CS-Rosetta official site.
–chmod 711 install.com if this is not executable.
— run ./install.com and the script will ask you to provide the full path of your rosetta-3.1 (not the path of rosetta_source).
–chmod 711 install.com if this is not executable.
— run ./install.com and the script will ask you to provide the full path of your rosetta-3.1 (not the path of rosetta_source).
You should see error messages that the install script cannot find some Rosetta executable files and my solution is to make soft links at “rosetta_source/bin”
Do this soft link before installing CS-rosetta.
ln -s AbinitioRelax.macosgccrelease AbinitioRelax.linuxgccrelease
ln -s extract_pdbs.macosgccrelease extract_pdbs.linuxgccrelease
ln -s extract_pdbs.macosgccrelease extract_pdbs.linuxgccrelease
— After installation, you should see something like “no errors found” and put the environmental setup in your csh or tcsh and source/update the shell. https://ameblo.jp/piemiphoge1974/entry-12640668050.html.
To test the CS-Rosetta, I directly go to examples/input, type: runCSRjob3.com gb3.tab and I got:
usersxxx:input>runCSRjob3.com gb3
gb3.pdb gb3.tab
lusersxxx:input>runCSRjob3.com gb3.tab
pre-checking input chemcial shift data …
*** Shift outlier: 14 G C Secondary Shift: -3.765 Limit: -3.725
*** Shift outlier: 15 E HA Secondary Shift: 1.313 Limit: 1.047
*** Shift outlier: 17 T HA Secondary Shift: 1.498 Limit: 1.047
*** Shift outlier: 19 K HA Secondary Shift: 1.070 Limit: 1.047
*** Shift outlier: 25 T CA Secondary Shift: 4.791 Limit: 4.660
*** Shift outlier: 27 E HA Secondary Shift: -1.698 Limit: -1.080
*** Shift outlier: 29 A C Secondary Shift: 4.021 Limit: 3.727
*** Shift outlier: 35 N C Secondary Shift: 4.104 Limit: 3.727
*** Shift outlier: 51 T HA Secondary Shift: 1.197 Limit: 1.047
*** Shift outlier: 52 F HA Secondary Shift: 1.164 Limit: 1.047
*** Shift outlier: 54 V CA Secondary Shift: -4.355 Limit: -3.445
*** Shift outlier: 56 E N Secondary Shift: 10.828 Limit: 10.047
*** C shift referecing offset: -1.289 ppm
Checking and preparing files …
MFR fragments searching … (may take a few hours…)
Done! MFR fragment tables farg9.t000.mfr.tab and frag3.t000.mfr.tab generated.
gb3.pdb gb3.tab
lusersxxx:input>runCSRjob3.com gb3.tab
pre-checking input chemcial shift data …
*** Shift outlier: 14 G C Secondary Shift: -3.765 Limit: -3.725
*** Shift outlier: 15 E HA Secondary Shift: 1.313 Limit: 1.047
*** Shift outlier: 17 T HA Secondary Shift: 1.498 Limit: 1.047
*** Shift outlier: 19 K HA Secondary Shift: 1.070 Limit: 1.047
*** Shift outlier: 25 T CA Secondary Shift: 4.791 Limit: 4.660
*** Shift outlier: 27 E HA Secondary Shift: -1.698 Limit: -1.080
*** Shift outlier: 29 A C Secondary Shift: 4.021 Limit: 3.727
*** Shift outlier: 35 N C Secondary Shift: 4.104 Limit: 3.727
*** Shift outlier: 51 T HA Secondary Shift: 1.197 Limit: 1.047
*** Shift outlier: 52 F HA Secondary Shift: 1.164 Limit: 1.047
*** Shift outlier: 54 V CA Secondary Shift: -4.355 Limit: -3.445
*** Shift outlier: 56 E N Secondary Shift: 10.828 Limit: 10.047
*** C shift referecing offset: -1.289 ppm
Checking and preparing files …
MFR fragments searching … (may take a few hours…)
Done! MFR fragment tables farg9.t000.mfr.tab and frag3.t000.mfr.tab generated.
Converting to ROSETTA fragments …
9mer fragments …
Checking MFR Fragments Candidates …
200 fragments candidates for target fragment 1-9
200 fragments candidates for target fragment 2-10
200 fragments candidates for target fragment 3-11
200 fragments candidates for target fragment 4-12
200 fragments candidates for target fragment 5-13
200 fragments candidates for target fragment 6-14
200 fragments candidates for target fragment 7-15
200 fragments candidates for target fragment 8-16
200 fragments candidates for target fragment 9-17
200 fragments candidates for target fragment 10-18
200 fragments candidates for target fragment 11-19
200 fragments candidates for target fragment 12-20
200 fragments candidates for target fragment 13-21
200 fragments candidates for target fragment 14-22
200 fragments candidates for target fragment 15-23
200 fragments candidates for target fragment 16-24
200 fragments candidates for target fragment 17-25
200 fragments candidates for target fragment 18-26
200 fragments candidates for target fragment 19-27
200 fragments candidates for target fragment 20-28
200 fragments candidates for target fragment 21-29
200 fragments candidates for target fragment 22-30
200 fragments candidates for target fragment 23-31
200 fragments candidates for target fragment 24-32
200 fragments candidates for target fragment 25-33
200 fragments candidates for target fragment 26-34
200 fragments candidates for target fragment 27-35
200 fragments candidates for target fragment 28-36
200 fragments candidates for target fragment 29-37
200 fragments candidates for target fragment 30-38
200 fragments candidates for target fragment 31-39
200 fragments candidates for target fragment 32-40
200 fragments candidates for target fragment 33-41
200 fragments candidates for target fragment 34-42
200 fragments candidates for target fragment 35-43
200 fragments candidates for target fragment 36-44
200 fragments candidates for target fragment 37-45
200 fragments candidates for target fragment 38-46
200 fragments candidates for target fragment 39-47
200 fragments candidates for target fragment 40-48
200 fragments candidates for target fragment 41-49
200 fragments candidates for target fragment 42-50
200 fragments candidates for target fragment 43-51
200 fragments candidates for target fragment 44-52
200 fragments candidates for target fragment 45-53
200 fragments candidates for target fragment 46-54
200 fragments candidates for target fragment 47-55
200 fragments candidates for target fragment 48-56
Collecting structural information … Done (2908)!
Creating Rosetta fragments … Done!
3mer fragments …
Checking MFR Fragments Candidates …
200 fragments candidates for target fragment 1-3
200 fragments candidates for target fragment 2-4
200 fragments candidates for target fragment 3-5
200 fragments candidates for target fragment 4-6
200 fragments candidates for target fragment 5-7
200 fragments candidates for target fragment 6-8
200 fragments candidates for target fragment 7-9
200 fragments candidates for target fragment 8-10
200 fragments candidates for target fragment 9-11
200 fragments candidates for target fragment 10-12
200 fragments candidates for target fragment 11-13
200 fragments candidates for target fragment 12-14
200 fragments candidates for target fragment 13-15
200 fragments candidates for target fragment 14-16
200 fragments candidates for target fragment 15-17
200 fragments candidates for target fragment 16-18
200 fragments candidates for target fragment 17-19
200 fragments candidates for target fragment 18-20
200 fragments candidates for target fragment 19-21
200 fragments candidates for target fragment 20-22
200 fragments candidates for target fragment 21-23
200 fragments candidates for target fragment 22-24
200 fragments candidates for target fragment 23-25
200 fragments candidates for target fragment 24-26
200 fragments candidates for target fragment 25-27
200 fragments candidates for target fragment 26-28
200 fragments candidates for target fragment 27-29
200 fragments candidates for target fragment 28-30
200 fragments candidates for target fragment 29-31
200 fragments candidates for target fragment 30-32
200 fragments candidates for target fragment 31-33
200 fragments candidates for target fragment 32-34
200 fragments candidates for target fragment 33-35
200 fragments candidates for target fragment 34-36
200 fragments candidates for target fragment 35-37
200 fragments candidates for target fragment 36-38
200 fragments candidates for target fragment 37-39
200 fragments candidates for target fragment 38-40
200 fragments candidates for target fragment 39-41
200 fragments candidates for target fragment 40-42
200 fragments candidates for target fragment 41-43
200 fragments candidates for target fragment 42-44
200 fragments candidates for target fragment 43-45
200 fragments candidates for target fragment 44-46
200 fragments candidates for target fragment 45-47
200 fragments candidates for target fragment 46-48
200 fragments candidates for target fragment 47-49
200 fragments candidates for target fragment 48-50
200 fragments candidates for target fragment 49-51
200 fragments candidates for target fragment 50-52
200 fragments candidates for target fragment 51-53
200 fragments candidates for target fragment 52-54
200 fragments candidates for target fragment 53-55
200 fragments candidates for target fragment 54-56
Collecting structural information … Done (4027)!
Creating Rosetta fragments … Done!
9mer fragments …
Checking MFR Fragments Candidates …
200 fragments candidates for target fragment 1-9
200 fragments candidates for target fragment 2-10
200 fragments candidates for target fragment 3-11
200 fragments candidates for target fragment 4-12
200 fragments candidates for target fragment 5-13
200 fragments candidates for target fragment 6-14
200 fragments candidates for target fragment 7-15
200 fragments candidates for target fragment 8-16
200 fragments candidates for target fragment 9-17
200 fragments candidates for target fragment 10-18
200 fragments candidates for target fragment 11-19
200 fragments candidates for target fragment 12-20
200 fragments candidates for target fragment 13-21
200 fragments candidates for target fragment 14-22
200 fragments candidates for target fragment 15-23
200 fragments candidates for target fragment 16-24
200 fragments candidates for target fragment 17-25
200 fragments candidates for target fragment 18-26
200 fragments candidates for target fragment 19-27
200 fragments candidates for target fragment 20-28
200 fragments candidates for target fragment 21-29
200 fragments candidates for target fragment 22-30
200 fragments candidates for target fragment 23-31
200 fragments candidates for target fragment 24-32
200 fragments candidates for target fragment 25-33
200 fragments candidates for target fragment 26-34
200 fragments candidates for target fragment 27-35
200 fragments candidates for target fragment 28-36
200 fragments candidates for target fragment 29-37
200 fragments candidates for target fragment 30-38
200 fragments candidates for target fragment 31-39
200 fragments candidates for target fragment 32-40
200 fragments candidates for target fragment 33-41
200 fragments candidates for target fragment 34-42
200 fragments candidates for target fragment 35-43
200 fragments candidates for target fragment 36-44
200 fragments candidates for target fragment 37-45
200 fragments candidates for target fragment 38-46
200 fragments candidates for target fragment 39-47
200 fragments candidates for target fragment 40-48
200 fragments candidates for target fragment 41-49
200 fragments candidates for target fragment 42-50
200 fragments candidates for target fragment 43-51
200 fragments candidates for target fragment 44-52
200 fragments candidates for target fragment 45-53
200 fragments candidates for target fragment 46-54
200 fragments candidates for target fragment 47-55
200 fragments candidates for target fragment 48-56
Collecting structural information … Done (2908)!
Creating Rosetta fragments … Done!
3mer fragments …
Checking MFR Fragments Candidates …
200 fragments candidates for target fragment 1-3
200 fragments candidates for target fragment 2-4
200 fragments candidates for target fragment 3-5
200 fragments candidates for target fragment 4-6
200 fragments candidates for target fragment 5-7
200 fragments candidates for target fragment 6-8
200 fragments candidates for target fragment 7-9
200 fragments candidates for target fragment 8-10
200 fragments candidates for target fragment 9-11
200 fragments candidates for target fragment 10-12
200 fragments candidates for target fragment 11-13
200 fragments candidates for target fragment 12-14
200 fragments candidates for target fragment 13-15
200 fragments candidates for target fragment 14-16
200 fragments candidates for target fragment 15-17
200 fragments candidates for target fragment 16-18
200 fragments candidates for target fragment 17-19
200 fragments candidates for target fragment 18-20
200 fragments candidates for target fragment 19-21
200 fragments candidates for target fragment 20-22
200 fragments candidates for target fragment 21-23
200 fragments candidates for target fragment 22-24
200 fragments candidates for target fragment 23-25
200 fragments candidates for target fragment 24-26
200 fragments candidates for target fragment 25-27
200 fragments candidates for target fragment 26-28
200 fragments candidates for target fragment 27-29
200 fragments candidates for target fragment 28-30
200 fragments candidates for target fragment 29-31
200 fragments candidates for target fragment 30-32
200 fragments candidates for target fragment 31-33
200 fragments candidates for target fragment 32-34
200 fragments candidates for target fragment 33-35
200 fragments candidates for target fragment 34-36
200 fragments candidates for target fragment 35-37
200 fragments candidates for target fragment 36-38
200 fragments candidates for target fragment 37-39
200 fragments candidates for target fragment 38-40
200 fragments candidates for target fragment 39-41
200 fragments candidates for target fragment 40-42
200 fragments candidates for target fragment 41-43
200 fragments candidates for target fragment 42-44
200 fragments candidates for target fragment 43-45
200 fragments candidates for target fragment 44-46
200 fragments candidates for target fragment 45-47
200 fragments candidates for target fragment 46-48
200 fragments candidates for target fragment 47-49
200 fragments candidates for target fragment 48-50
200 fragments candidates for target fragment 49-51
200 fragments candidates for target fragment 50-52
200 fragments candidates for target fragment 51-53
200 fragments candidates for target fragment 52-54
200 fragments candidates for target fragment 53-55
200 fragments candidates for target fragment 54-56
Collecting structural information … Done (4027)!
Creating Rosetta fragments … Done!
Generating ROSETTA path file …
Generating ROSETTA running script …
Generating ROSETTA running script …
Fragment Candidates Ready!
Go to rosetta, and type runRosetta3.com to run ROSETTA(3.X)!
Go to rosetta, and type runRosetta3.com to run ROSETTA(3.X)!
Mac Os X Version 10 6 Download
However, when I go to the just generated rosetta folder and run “runRosetta3.com”, I got errors:
usersxxx:rosetta>runRosetta3.com
ERROR: Option matching -in::file::frag3 not found in command line top-level context Age of empires 2 conquerors download mac.
ERROR: Option matching -in::file::frag3 not found in command line top-level context Age of empires 2 conquerors download mac.
—> I checked the Rosetta 3 command list and edit the “runRosetta3.com”, replace all double colons “::” by single colons “:” and save it. The edited “runRosetta3.com” is running now.
–> After testing, taking off one colon is necessary to run CS-rosetta well on my iMac.
Mac Os X 10 13 6 Download
update: 1/27/2011 Free mac os applications download.